de.julielab » jcore-pipeline-runner
jcore-pipeline-runner
更新时间: 2022-12-09 17:16de.julielab » jcore-pipeline-runner-assembly
jcore-pipeline-runner-assembly
更新时间: 2022-12-09 17:16de.julielab » jcore-gnp-bioc-reader
A reader for the BioC format used by GNormPlus. Reads the text and the annotations, both species and genes.
更新时间: 2022-12-09 03:23de.julielab » jcore-version-normalizer
jcore-version-normalizer
更新时间: 2022-12-09 00:33de.julielab » julielab-bioportal-ontology-tools
This project contains some utilities to process ontologies and related data as retrieved from BioPortal. The tools include the download of ontologies from BioPortal, download of mappings from BioPortal and the extraction of names, synonyms, descriptions and superclasses of ontology concepts from downloaded ontologies.
更新时间: 2022-12-04 03:16de.julielab » gene-mapper-resources
This project assembles code and files required to build the dictionaries and indexes used by the JCoRe Gene Mapper.
更新时间: 2022-12-04 02:48de.julielab » julielab-gene-mapper
Parent POM for: Mapper to find database entries of gene entity mentions
更新时间: 2022-12-04 02:48de.julielab » gene-candidate-retrieval
gene-candidate-retrieval
更新时间: 2022-12-04 02:48de.julielab » gene-species-assignment
The task that is the subject of this project is the assignment of taxonomy identifiers to mentions of genes in text documents. The base for the assignment are mostly the mentions of species in the same document.
更新时间: 2022-12-04 02:45de.julielab » gene-mapper-experimental-base
This project has a lot of business classes to work with genes and related named entities. Genes are part of a GeneDocument and may have gold IDs as well as mapped/predicted IDs. Another large part are species because most (all?) gene ID databases are species specific. So there are also classes or members to represent species mentions and the assignment of species IDs (taxonomy IDs) to genes. There is little to no business logic herein. This project is only useful as building block in other projects dealing with species assignment, gene ID mapping or similar efforts.
更新时间: 2022-12-04 02:41de.julielab » jcore-bionlpgold-pred-gene-merge-ae
Given the gold BioNLP ST gene mentions and other gene mentions - possibly from gene recognizer - merges the two different sources of genes. For simplicity, this component employs two different types to represent genes. The BioNLP ST reader uses the de.julielab.jcore.types.Gene type. The other genes should be realized with de.julielab.jcore.types.Protein annotations.
更新时间: 2022-11-25 18:10de.julielab » jcore-bionlpformat-consumer
This consumer is used to generate BioNLP-ST (2009) compliant data from a CAS.
更新时间: 2022-11-23 22:59de.julielab » jcore-cc-archetype
An archetype to quickly create new JCoRe UIMA CAS consumers.
更新时间: 2022-11-20 21:14| 仓库 | 个数 |
| Central | 592045 |