de.julielab » jcore-gnormplus-ae
Wrapper for the JULIE Lab variant of the GNormPlus gene ID mapper.
更新时间: 2024-05-20 21:41de.julielab » jcore-pmc-db-reader
JeDIS database reader for PMC base documents.
更新时间: 2024-04-17 14:58de.julielab » jcore-xml-db-reader
A Collection Reader that converts XML, stored in a database, to CAS objects. The conversion is the same employed by the jcore-xml-reader, making use of the jcore-xml-mapper. The reader requires a configuration file which determines the database connection, the table schema and the PostgreSQL schema (namespace) to use.
更新时间: 2024-02-23 15:42UIMA Wrapper for the JULIE Sentence Boundary Detector.
更新时间: 2024-02-22 14:38de.julielab » jcore-xmi-db-reader
Reads CAS XMI data from a relational database (Postgres). Thus, the stored CASes may then be processed further.
更新时间: 2024-02-22 14:16Abstract database reader for database driven processing
更新时间: 2024-02-22 14:13de.julielab » jcore-db-checkpoint-ae
This is a JeDIS component. It can be used to set the 'last component' column in a subset table. This help to keep track of the pipeline status.
更新时间: 2024-02-22 14:12de.julielab » jcore-xmi-db-writer
Writes CAS data in XMI format into a relational (PostgreSQL) database. It is possible to write the whole XMI for each document into the database. However, it is also possible to define a list of annotations that should be written into separate tables. The JCoRe XMI Database Reader can then be used to assemble XMI data from a given set of annotations.
更新时间: 2024-02-22 14:10de.julielab » jcore-pubmed-db-reader
An instantiation of the jcore-db-reader that uses the jcore-xml-mapper to retrieve and parse PubMed XML from a PostgreSQL database. The XML format of retrieved documents is expected to follow the PubMed/MEDLINE XML schema that was used beginning from 2017. I.e. the root document of a document must be PubmedArticle and not, as it was for MEDLINE until 2017, MedlineCitation.
更新时间: 2024-02-20 18:58This is an intermediate parent POM between the jcore-base parent and the components belonging to the Jena Document Information (JeDIS) infrastructure. This POM determines the version of CoStoSys to use.
更新时间: 2024-02-20 18:58de.julielab » jcore-jsbd-ae-biomedical-english
UIMA Wrapper for the JCoRe Sentence Boundary Detector (jcore-jsbd-ae) with a model trained on data from both the GENIA and PennBioIE corpus as well as additional material from MedLine abstracts.
更新时间: 2024-02-20 18:28de.julielab » jcore-xml-mapper
A generic XML mapper to create CAS instances reflecting contents of XML documents. Especially created to read PubMed/Medline XML.
更新时间: 2024-02-20 15:34de.julielab » jcore-gnormplus-pubmed-db-reader
This is the GNormPlus XML DB multiplier base component that is contained in the JCoRe GNormPlus AE project in jcore-base complemented by the pubmed XML mapping file. This is a drop-in replacement for the PubMed DB Multiplier that runs GNormPlus after the XML data has been added to the CAS. Note that running GNormPlus requires the presence of the GNormPlus resources and external programs in the working directory of the pipeline.
更新时间: 2024-02-14 14:46de.julielab » jcore-gnp-bioc-writer
Writes CAS documents into the BioC XML format used by the gene tagger and normalizer GNormPlus.
更新时间: 2024-02-14 14:44| 仓库 | 个数 |
| Central | 592045 |