A UIMA wrapper around the BioSem Event Extractor from the University of Amsterdam. http://www.ncbi.nlm.nih.gov/pubmed/22859502
更新时间: 2024-01-04 23:16de.julielab » biosem-event-extractor
The event extraction engine used by the Amsterdam team in the BioNLP Shared Task 2011 challenge. The code was adapted to also work with all data of the ST2013 challenge (there are 4 more trigger/event types in these data in comparison with the ST2011), evaluation results stayed the same.
更新时间: 2024-01-04 23:07de.julielab » julielab-elastic-query-components
This is a Tapestry 5 project that offers a Tapestry-IoC integrated query layer for an ElasticSearch server.
更新时间: 2023-03-16 02:50A utility for managing documents stored in a PostgreSQL database. The documents are imported into a PostgreSQL DB as full texts with the goal to be able to retrieve the documents by their PubMedID efficiently. For more sophisticated tasks, a user configuration file can be delivered which can take control of the table schema to use, the PostgreSQL schema to use and the actual database server to connect to as well as the concrete database.
更新时间: 2023-03-10 04:35de.julielab » elasticsearch-mapper-preanalyzed
This plugin allows to send field data in a preanalyzed format to ElasticSearch. No analysis will be done by ElasticSearch, the format defines all terms specifically.
更新时间: 2023-02-22 02:45de.julielab » julielab-concept-creation-hgnc-groups
JULIE Lab Concept Creation HGNC Groups
更新时间: 2023-01-24 04:43de.julielab » julielab-concept-creation-mesh
This project contains algorithms to create database concepts from the XML version of the MeSH. There is a full API to work with MeSH XML in this project.
更新时间: 2023-01-24 04:43de.julielab » julielab-concept-creation-bioportal
This project uses the JULIE Lab BioPortal Tools to create database concepts for ontology classes.
更新时间: 2023-01-24 04:43de.julielab » julielab-concept-creation-famplex
JULIE Lab Concept Creation for FamPlex
更新时间: 2023-01-24 04:43de.julielab » julielab-concept-creation-ncbi-gene
This project uses internal JULIE Lab files to create database concepts for the NCBI Gene database.
更新时间: 2023-01-24 04:43de.julielab » julielab-concept-db-manager-core
The central interfaces and services for the concept database manager.
更新时间: 2023-01-24 04:43de.julielab » julielab-concept-db-application
julielab-concept-db-application
更新时间: 2023-01-24 04:43de.julielab » julielab-concept-db-manager
This project is a collection of tools with the goal to import ontological concepts into a graph database. The graph database then allows to traverse the imported data with a graph-specific query language. In case of a Neo4j database, which is the one employed by this tool, uses the Cypher query language.
更新时间: 2023-01-24 04:42de.julielab » julielab-neo4j-plugins-utilities
This project contains various utilities used for the Neo4j server plugins developed at the JULIE lab.
更新时间: 2023-01-24 04:36| 仓库 | 个数 |
| Central | 592045 |