GATK4 gatk

Group	org.broadinstitute
描述	Development on GATK 4
Packaging
Size
文件	pom jar
网址	http://github.com/broadinstitute/gatk
发布时间	2017-07-20 22:46

dependencies

Group	Artifact	Version
org.broadinstitute	barclay	1.1.0
com.intel	genomicsdb	0.6.4-proto-3.0.0-beta-1
com.opencsv	opencsv	3.4
com.google.guava	guava	18.0
com.github.samtools	htsjdk	2.10.1
com.google.cloud	google-cloud-nio	0.19.0-alpha
com.google.cloud.genomics	google-genomics-dataflow	v1beta2-0.15
com.google.cloud.genomics	gatk-tools-java	1.1
org.apache.logging.log4j	log4j-api	2.3
org.apache.logging.log4j	log4j-core	2.3
org.apache.commons	commons-lang3	3.4
org.apache.commons	commons-math3	3.5
org.apache.commons	commons-collections4	4.1
org.apache.commons	commons-vfs2	2.0
commons-io	commons-io	2.4
org.reflections	reflections	0.9.10
com.google.cloud.dataflow	google-cloud-dataflow-java-sdk-all	0.4.150727
it.unimi.dsi	fastutil	7.0.6
com.google.apis	google-api-services-genomics	v1-rev90-1.22.0
com.google.cloud.genomics	google-genomics-utils	v1beta2-0.30
com.github.wendykierp	JTransforms	3.1
org.broadinstitute	hdf5-java-bindings	1.1.0-hdf5_2.11.0
org.nd4j	nd4j-native-platform	0.5.0
org.nd4j	nd4j-kryo_2.11	0.5.0
org.ojalgo	ojalgo	39.0
org.apache.spark	spark-mllib_2.11	2.0.2
org.bdgenomics.bdg-formats	bdg-formats	0.5.0
org.bdgenomics.adam	adam-core-spark2_2.11	0.20.0
org.jgrapht	jgrapht-core	0.9.1
org.testng	testng	6.11
org.apache.hadoop	hadoop-minicluster	2.7.2
org.seqdoop	hadoop-bam	7.8.0
org.apache.hadoop	hadoop-client	2.7.2
com.github.jsr203hadoop	jsr203hadoop	1.0.3
de.javakaffee	kryo-serializers	0.41
com.github.fommil.netlib	all	1.1.2
com.esotericsoftware	kryo	3.0.3
com.esotericsoftware	reflectasm	1.10.0
com.intel.gkl	gkl	0.5.2
org.broadinstitute	gatk-bwamem-jni	1.0.0
org.broadinstitute	gatk-fermilite-jni	1.0.0
org.objenesis	objenesis	2.1
org.hamcrest	hamcrest-all	1.3
junit	junit	4.12
org.mockito	mockito-core	1.10.19

developers

gatkdev

GATK Development Team

licenses

BSD 3-Clause

https://github.com/broadinstitute/gatk/blob/master/LICENSE.TXT