GATK4 gatk

Group	org.broadinstitute
描述	Development on GATK 4
Packaging
Size
文件	pom jar
网址	http://github.com/broadinstitute/gatk
发布时间	2023-12-14 06:57

dependencies

Group	Artifact	Version
org.freemarker	freemarker	2.3.30
org.broadinstitute	barclay	5.0.0
org.aeonbits.owner	owner	1.0.9
com.github.broadinstitute	picard	3.1.1
org.genomicsdb	genomicsdb	1.5.1
com.opencsv	opencsv	3.4
com.google.guava	guava	32.1.3-jre
com.github.samtools	htsjdk	4.1.0
com.google.cloud	google-cloud-nio	0.127.8
com.google.cloud	google-cloud-bigquery	2.35.0
com.google.cloud	google-cloud-bigquerystorage	2.47.0
gov.nist.math.jama	gov.nist.math.jama	1.1.1
com.google.cloud.bigdataoss	gcs-connector	1.9.4-hadoop3
org.apache.logging.log4j	log4j-api	2.17.1
org.apache.logging.log4j	log4j-core	2.17.1
org.apache.logging.log4j	log4j-jcl	2.17.1
org.apache.commons	commons-lang3	3.14.0
org.apache.commons	commons-math3	3.6.1
org.hipparchus	hipparchus-stat	2.0
org.apache.commons	commons-collections4	4.4
org.apache.commons	commons-vfs2	2.9.0
org.apache.commons	commons-configuration2	2.9.0
org.apache.httpcomponents	httpclient	4.5.12
commons-beanutils	commons-beanutils	1.9.3
commons-io	commons-io	2.5
org.reflections	reflections	0.9.10
it.unimi.dsi	fastutil	7.0.13
org.broadinstitute	hdf5-java-bindings	1.1.0-hdf5_2.11.0
org.broadinstitute	gatk-native-bindings	1.0.0
org.ojalgo	ojalgo	44.0.0
org.ojalgo	ojalgo-commons-math3	1.0.0
org.apache.spark	spark-mllib_2.12	3.5.0
com.thoughtworks.paranamer	paranamer	2.8
org.jgrapht	jgrapht-core	1.1.0
org.jgrapht	jgrapht-io	1.1.0
org.disq-bio	disq	0.3.8
org.apache.hadoop	hadoop-client	3.3.6
com.github.jsr203hadoop	jsr203hadoop	1.0.3
org.apache.orc	orc	1.6.5
de.javakaffee	kryo-serializers	0.45
org.objenesis	objenesis	1.2
com.github.fommil.netlib	netlib-native_ref-osx-x86_64	1.1
com.github.fommil.netlib	netlib-native_ref-linux-x86_64	1.1
com.github.fommil.netlib	netlib-native_system-linux-x86_64	1.1
com.github.fommil.netlib	netlib-native_system-osx-x86_64	1.1
com.intel.gkl	gkl	0.8.11
org.broadinstitute	gatk-bwamem-jni	1.0.4
org.broadinstitute	gatk-fermilite-jni	1.2.0
org.broadinstitute	http-nio	1.1.0
org.xerial	sqlite-jdbc	3.44.1.0
net.grey-panther	natural-comparator	1.1
com.fasterxml.jackson.module	jackson-module-scala_2.12	2.9.8

developers

gatkdev

GATK Development Team

licenses

Apache 2.0

https://github.com/broadinstitute/gatk/blob/master/LICENSE.TXT