GATK4 gatk

Group	org.broadinstitute
描述	Development on GATK 4
Packaging	jar
Size	47.18 MB
文件	pom jar
网址	http://github.com/broadinstitute/gatk
发布时间	2018-07-31 03:03

dependencies

Group	Artifact	Version
org.broadinstitute	barclay	2.1.0
org.aeonbits.owner	owner	1.0.9
com.github.broadinstitute	picard	2.18.7
com.intel	genomicsdb	0.9.2-proto-3.0.0-beta-1+3102eb38d772-retry
com.opencsv	opencsv	3.4
com.google.guava	guava	18.0
com.github.samtools	htsjdk	2.16.0
org.broadinstitute	google-cloud-nio-GATK4-custom-patch	0.20.4-alpha-GCS-RETRY-FIX
gov.nist.math.jama	gov.nist.math.jama	1.1.1
com.google.cloud.bigdataoss	gcs-connector	1.6.3-hadoop2
org.apache.logging.log4j	log4j-api	2.3
org.apache.logging.log4j	log4j-core	2.3
org.apache.commons	commons-lang3	3.5
org.apache.commons	commons-math3	3.5
org.apache.commons	commons-collections4	4.1
org.apache.commons	commons-vfs2	2.0
commons-io	commons-io	2.5
org.reflections	reflections	0.9.10
it.unimi.dsi	fastutil	7.0.6
org.broadinstitute	hdf5-java-bindings	1.1.0-hdf5_2.11.0
org.broadinstitute	gatk-native-bindings	1.0.0
org.ojalgo	ojalgo	44.0.0
org.ojalgo	ojalgo-commons-math3	1.0.0
org.apache.spark	spark-mllib_2.11	2.2.0
org.bdgenomics.bdg-formats	bdg-formats	0.5.0
org.bdgenomics.adam	adam-core-spark2_2.11	0.20.0
org.jgrapht	jgrapht-core	0.9.1
org.testng	testng	6.11
org.apache.hadoop	hadoop-minicluster	2.8.2
org.seqdoop	hadoop-bam	7.10.0
org.apache.hadoop	hadoop-client	2.8.2
com.github.jsr203hadoop	jsr203hadoop	1.0.3
de.javakaffee	kryo-serializers	0.41
com.github.fommil.netlib	netlib-native_ref-osx-x86_64	1.1
com.github.fommil.netlib	netlib-native_ref-linux-x86_64	1.1
com.github.fommil.netlib	netlib-native_system-linux-x86_64	1.1
com.github.fommil.netlib	netlib-native_system-osx-x86_64	1.1
com.esotericsoftware	kryo	3.0.3
com.esotericsoftware	reflectasm	1.10.0
com.intel.gkl	gkl	0.8.5
org.broadinstitute	gatk-bwamem-jni	1.0.4
org.broadinstitute	gatk-fermilite-jni	1.2.0
org.xerial	sqlite-jdbc	3.20.1
biz.k11i	xgboost-predictor	0.3.0
org.objenesis	objenesis	2.1
org.mockito	mockito-core	2.10.0
com.google.jimfs	jimfs	1.1

developers

gatkdev

GATK Development Team

licenses

BSD 3-Clause

https://github.com/broadinstitute/gatk/blob/master/LICENSE.TXT